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SGTC - Center Publications

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Following is a list of publications starting in 1993, when the Stanford Genome Technology Center was founded.

The references below are hyper-linked to their abstract in PubMed or, whenever possible, directly to the journal. (Access to journals may require membership or subscription).

For some papers supplemental web sites provide additional information.

Detailed information about patents can be found under Stanford References (Office of Technology Licensing at Stanford University) or at the United States Patent and Trademark Office (USPTO).

Patents & Technology Transfer

  1. Verfahren zur Trennung von Nucleinsäuren. Austrian Patent No. 398,973; Vienna, Austria. (Licensed to Transgenomic Inc. Omaha, NE, USA)
    Bonn, G., Huber, C., Oefner, P.J. (1994)

  2. Nucleic Acid Separation on Alkylated Nonporous Polymer Beads. US Patent No. 5,585,236 (Licensed to Transgenomic Inc., Omaha, NE, USA).
    Bonn, G., Huber, C., Oefner, P.J. (1996)

  3. Electrophoresis using contour-clamped electric fields.
    Chu, G., Vollrath, D., Davis, R., (1996). United States Patent 5,549,796. The Board of Trustees of the Leland Stanford Junior University. [USPTO]

  4. Software to determine optimum temperature for DHPLC given DNA sequence.
    Hansen, N.F., Oefner, P.J., (1997). Stanford University Invention Disclosure S97-175 (Tangible Research Property in conjunction with U.S. Patent 5,795,976). [Stanford Reference]

  5. Apparatus and method for shear breakage of polynucleotides.
    Oefner, P.J., Hunicke-Smith S.P., (1998). United States Patent 5,846,832. The Board of Trustees of the Leland Stanford Junior University (Stanford, CA). Licensed to GeneMachines, San Carlos, CA, USA. [USPTO], [Stanford Reference]

  6. Detection of nucleic acid heteroduplex molecules by denaturing high-performance liquid chromatography and methods for comparative sequencing.
    Oefner, P.J., Underhill, P.A., (1998). United States Patent Number 5,795,976. The Board of Trustees of the Leland Stanford Junior University, Stanford, CA. Licensed to Transgenomic Inc., Omaha, NE, USA, Hewlett-Packard, Palo Alto, CA, USA, Qiagen Inc., Bothell, WA, USA, and Varian, Walnut Creek, CA, USA. [USPTO], [Stanford Reference]

  7. Thermocycling apparatus and method.
    Hunicke-Smith S.P., (1999). United States Patent 5,985,651. The Board of Trustees of the Leland Stanford Junior University. [USPTO]

  8. Allele-specific Genotyping by Denaturing HPLC.
    Oefner P.J., (1999). United States Patent 6,453.244. [Stanford Reference], [USPTO]

  9. Thermocycling apparatus and method.
    Hunicke-Smith S.P., (2000). United States Patent 6,132,996. The Board of Trustees of the Leland Stanford Junior University. [USPTO]

  10. Highly parallel and sensitive method for identifying drugs and drug targets.
    Davis, R.W., Giaever, G.N., Shoemaker D., (2000). United States Patent 6,046,002. The Board of Trustees of the Leland Stanford Junior University. [USPTO], [Stanford Reference]

  11. Microcentrifuge.
    Marziali A.,(2001), United States Patent 6,238,330. The Board of Trustees of the Leland Stanford Junior University, Palo Alto, CA. [USPTO]

  12. Method for simultaneous centrifugation of samples.
    Marziali, A., (2001). United States Patent 6,273,848. The Board of Trustees of the Leland Stanford Junior University, Palo Alto, CA. [USPTO]

  13. High-density random-order array of magnetic beads for genotyping.
    Jain, M., Roberts, L., White, R.L., (2002). Patent Pending, The Board of Trustees of the Leland Stanford Junior University, Stanford, CA. Patents Pending, [Stanford Reference]

  14. Detection of polymorphisms by denaturing high-performance liquid chromatography.
    Oefner, P.J., (2002). United States Patent 6,453,244. Stanford University, Palo Alto, CA. [USPTO], [Stanford Reference]

  15. Ultrasonic Sprayer.
    Ronaghi M., [Stanford Reference]

  16. Universal Support for Oligonucleotide Synthesis with Enzymatic Release.
    Hardenbol P., Willis, T., [Stanford Reference]

  17. Cell-Based Assay for 1) Identifying Cell's Reactivity to Compound and 2) Identifying Compounds that Act Against a Target of Choice.
    Davis, R.W., Giaever, G., Patents Pending, [Stanford Reference]

  18. Concatenated Oligonucleotide Primer Synthesis for PCR.
    Davis, R.W., Hardenbol P., Willis T., [Stanford Reference]

  19. Reciprocal Hemizygous Scanning (RHS).
    Davis, R.W., McCusker, J., Steinmetz L.M., Patent Application, [Stanford Reference]

  20. Human Y Chromosome Specific Single Nucleotide Polymorphisms.
    Oefner, P.J., Underhill, P.A., U.S. Patent Pending, [Stanford Reference]

  21. Temperature-Modulated Array High-Performance Liquid Chromatography.
    Huber, C.G., O'Keefe, M., Oberacher H., Oefner P.J., Premstaller, A., Xiao, W., Provisional Patent filed, [Stanford Reference]

  22. Microarray substrate with integrated photodetector and methods of use thereof.
    O'Keefe M., Patent Application [USPTO]

  23. Apparatus and methods for parallel processing of micro-volume liquid reactions.
    O'Keefe, M., Foreman, PK., [USPTO]

  24. Method for determining genetic affiliation, substructure, and gene flow within human populations.
    Oefner, P.J., Underhill, P.A. (2003) U.S. Patent 0,134,285 A1.

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Original Papers

  1. Point mutations that separate the role of Saccharomyces cerevisiae centromere binding factor 1 in chromosome segregation from its role in transcriptional activation.
    Foreman, P. K., Davis, R. W. (1993). Genetics. 1993 Oct;135(2):287-96. [PubMed Abstract]

  2. A conditional sterile mutation eliminates surface components from Arabidopsis pollen and disrupts cell signaling during fertilization.
    Preuss, D., Lemieux, B., Yen, G., Davis, R. W. (1993). Genes Dev. 1993 Jun;7(6):974-85. [PubMed Abstract]

  3. A dominant truncation allele identifies a gene, STE20, that encodes a putative protein kinase necessary for mating in Saccharomyces cerevisiae.
    Ramer, S. W.; Davis, R. W. (1993). Proc Natl Acad Sci U S A. 1993 Jan 15;90(2):452-6. [PubMed Abstract], [Publisher]

  4. The HAT4 gene of Arabidopsis encodes a developmental regulator.
    Schena, M., Lloyd, A. M., Davis, R. W. (1993). Genes Dev. 1993 Mar;7(3):367-79. [PubMed Abstract]

  5. Cloning vectors for the synthesis of epitope-tagged, truncated and chimeric proteins in Saccharomyces cerevisiae.
    Foreman, P.K., Davis, R.W. (1994). Gene. 1994 Jun 24;144(1):63-8. [PubMed Abstract]

  6. The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root.
    Galway, M. E., Masucci, J. D., Lloyd, A. M., Walbot, V., Davis, R. W. Schiefelbein, J. W. (1994). Dev Biol. 1994 Dec;166(2):740-54. [PubMed Abstract]

  7. Quantitative trait locus analysis of susceptibility to diet-induced atherosclerosis in recombinant inbred mice.
    Hyman, R. W., Frank, S., Warden, C. H., Daluiski, A., Heller, R., Lusis, A. J. (1994). Biochem Genet. 1994 Dec;32(11-12):397-407. [PubMed Abstract]

  8. Epidermal cell fate determination in Arabidopsis: patterns defined by a steroid-inducible regulator.
    Lloyd, A. M., Schena, M., Walbot, V., Davis, R. W. (1994). Science. 1994 Oct 21;266(5184):436-9. [PubMed Abstract]

  9. Functional expression of the yeast FLP/FRT site-specific recombination system in Nicotiana tabacum.
    Lloyd, A. M., Davis, R. W. (1994). Mol Gen Genet. 1994 Mar;242(6):653-7. [PubMed Abstract]

  10. Saccharomyces cerevisiae virulence phenotype as determined with CD-1 mice is associated with the ability to grow at 42 degrees C and form pseudohyphae.
    McCusker, J. H., Clemons, K. V., Stevens, D. A., Davis, R. W. (1994). Infect Immun. 1994 Dec;62(12):5447-55. [PubMed Abstract]

  11. Genetic characterization of pathogenic Saccharomyces cerevisiae isolates.
    McCusker, J. H., Clemons, K. V., Stevens, D. A., Davis, R. W. (1994). Genetics. 1994 Apr;136(4):1261-9. [PubMed Abstract]

  12. Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes.
    Preuss, D., Rhee, S. Y., Davis, R. W. (1994). Science. 1994 Jun 3;264(5164):1458-60. [PubMed Abstract]

  13. Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families.
    Schena, M., Davis, R. W. (1994). Proc Natl Acad Sci U S A. 1994 Aug 30;91(18):8393-7. [PubMed Abstract], [Publisher]

  14. Pathogenicity of Saccharomyces cerevisiae in complement factor five-deficient mice.
    Byron, J. K., Clemons, K. V., McCusker, J. H., Davis, R. W., Stevens, D. A. (1995). Infect Immun. 1995 Feb;63(2):478-85. [PubMed Abstract]

  15. Micellar electrokinetic chromatography of monosaccharides derivatized with 1-phenyl-3-methyl-2-pyrazolin-5-one.
    Chiesa, C., Oefner, P. J., Zieske, L. R., O'Neill, R. A. (1995). J Capillary Electrophor. 1995 Jul-Aug;2(4):175-83. [PubMed Abstract]

  16. Accurate and absolute quantitative measurement of gene expression by single-tube RT-PCR and HPLC.
    Hayward-Lester, A., Oefner, P. J., Sabatini, S., Doris, P. A. (1995). Genome Res. 1995 Dec;5(5):494-99. [PubMed Abstract]

  17. Rapid and accurate sizing of DNA fragments by ion-pair chromatography on alkylated nonporous poly(styrene-divinylbenzene) particles.
    Huber, C., Oefner, P., Bonn, G. (1995). Anal. Chem 67:587-585

  18. An automated multiplex oligonucleotide synthesizer: development of high-throughput, low-cost DNA synthesis.
    Lashkari, D. A., Hunicke-Smith, S. P., Norgren, R. M., Davis, R. W., Brennan, T. (1995). Proc Natl Acad Sci U S A. 1995 Aug 15;92(17):7912-5. [PubMed Abstract], [Publisher]

  19. Sliding-plate gel caster.
    Lashkari, D. A., Norgren, R. M., Davis, R. W. (1995). Biotechniques Apr 18(4):625-6

  20. Surface-charge reversed capillary zone electrophoresis of inorganic and organic anions.
    Oefner, P.J. (1995). Electrophoresis. 1995 Jan;16(1):46-56. [PubMed Abstract]

  21. Analysis of inorganic and organic anions in seminal plasma using charge reversed capillary electrophoresis and indirect UV detection.
    Oefner, P.J. (1995). Electrophoresis 16:46-56

  22. Quantitative monitoring of gene expression patterns with a complementary DNA microarray.
    Schena, M., Shalon, D., Davis, R. W., Brown, P. O. (1995). Science. 1995 Oct 20;270(5235):467-70. [PubMed Abstract]

  23. Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces.
    Clemons, K.V., Park, P.S., McCusker, J.H., Davis, R.W., Stevens, D.A., (1996). J. Infec. Dis

  24. CDP1, a novel Saccharomyces cerevisiae gene required for proper nuclear division and chromosome segregation.
    Foreman, P.K., Davis, R.W., (1996). Dec, Genetics, 144(4):1387-1397. [PubMed Abstract]

  25. Cloning, characterization, and steroid-dependent posttranscriptional processing of RUSH-1 alpha and beta, two uteroglobin promoter-binding proteins.
    Hayward-Lester, A., Hewetson, A., Beale, E.G., Oefner, P.J., Doris, P.A., Chilton, B.S., (1996). Nov, Mol Endocrinol, 10(11):1335-1349. [PubMed Abstract].

  26. Rapid quantification of gene expression by competitive RT-PCR and ion-pair reversed-phase HPLC.
    Hayward-Lester, A., Oefner, P.J., Doris, P.A., (1996). Feb, Biotechniques, 20(2):250-257. [PubMed Abstract].

  27. A comparison of micropellicular anion-exchange and reversed-phase stationary phases for HPLC analysis of oligonucleotides.
    Huber, C.G., Stimpfl, E., Oefner, P.J., Bonn, G.K., (1996). LC-GC, 14(2):114-127

  28. After period of gestation, DNA chips coming of age.
    O’Connell, J.P., Davis, Ronald W., Chee, M., Lockhart, D.J., Fodor, S.P., Collins, F., (1996). Dec, Chem. & Eng. News.

  29. Efficient random subcloning of DNA sheared in a recirculating point-sink flow system.
    Oefner, P.J., Hunicke-Smith, S.P., Chiang, L., Dietrich, F., Mulligan, J., Davis, R.W., (1996). Oct 15, Nucleic Acids Res, 24(20):3879-3886. [Publisher Full Text].

  30. Familial hemiplegic migraine and episodic ataxia type-2 are caused by mutations in the Ca2+ channel gene CACNL1A4.
    Ophoff, R.A., Terwindt, G.M., Vergouwe, M.N., van Eijk, R., Oefner, P.J., Hoffman, S.M., Lamerdin, J.E., Mohrenweiser, H.W., Bulman, D.E., Ferrari, M., Haan, J., Lindhout, D., van Ommen, G.J., Hofker, M.H., Ferrari, M.D., Frants, R.R., (1996). Nov 1, Cell, 87(3):543-552. [PubMed Abstract].

  31. Phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons.
    Pettersson, B., Leitner, T., Ronaghi, M., Bolske, G., Uhlen, M., Johansson, K.E., (1996). Jul, J Bacteriol, 178(14):4131-4142. [PubMed Abstract].

  32. Real-time DNA sequencing using detection of pyrophosphate release.
    Ronaghi, M., Karamohamed, S., Pettersson, B., Uhlen, M., Nyren, P., (1996). Nov 1, Anal Biochem, 242(1):84-89. [PubMed Abstract] DOI: 10.1006/abio.1996.0432.

  33. Parallel human genome analysis: microarray-based expression monitoring of 1000 genes.
    Schena, M., Shalon, D., Heller, R., Chai, A., Brown, P.O., Davis, R.W., (1996). Oct 1, Proc Natl Acad Sci U S A, 93(20):10614-10619. [Publisher Abstract].

  34. Analysis of glycolysis metabolites by capillary zone electrophoresis with indirect UV detection.
    Shen, P., Hauri, D., Ross, J., Oefner, P.J., (1996). May-Jun, J Capillary Electrophor, 3(3):155-163. [PubMed Abstract].

  35. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy.
    Shoemaker, D.D., Lashkari, D.A., Morris, D., Mittmann, M., Davis, R.W., (1996). Dec, Nat Genet, 14(4):450-456. [PubMed Abstract].

  36. Hepatitis C virus detection by single-round PCR specific for the terminal 3' noncoding region.
    Umlauft, F., Wong, D.T., Oefner, P.J., Underhill, P.A., Cheung, R.C., Wright, T.L., Kolykhalov, A.A., Gruenewald, K., Greenberg, H.B., (1996). Oct, J Clin Microbiol, 34(10):2552-2558. [Publisher Abstract].

  37. A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history.
    Underhill, P.A., Jin, L., Zemans, R., Oefner, P.J., Cavalli-Sforza, L.L., (1996). Jan 9, Proc Natl Acad Sci U S A, 93(1):196-200. [Publisher Abstract].

  38. Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA.
    Agyare, F.D., Lashkari, D.A., Lagos, A., Namath, A.F., Lagos, G., Davis, R.W., Lemieux, B., (1997). Jan, Genome Res, 7(1):1-9. [PubMed Abstract].

  39. The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI.
    Bussey, H., Storms, R.K., Ahmed, A., Albermann, K., Allen, E., Ansorge, W., Araujo, R., Aparicio, A., Barrell, B., Badcock, K., Benes, V., Botstein, D., Bowman, S., Bruckner, M., Carpenter, J., Cherry, J.M., Chung, E., Churcher, C., Coster, F., Davis, K., Davis, R.W., Dietrich, F.S., Delius, H., DiPaolo, T., Hani, J., et al., (1997). May 29, Nature, 387(6632 Suppl):103-105. [PubMed Abstract].

  40. Application of DNA typing methods and genetic analysis to epidemiology and taxonomy of Saccharomyces isolates.
    Clemons, K.V., Park, P., McCusker, J.H., McCullough, M.J., Davis, R.W., Stevens, D.A., (1997). Jul, J Clin Microbiol, 35(7):1822-1828

  41. The nucleotide sequence of Saccharomyces cerevisiae chromosome V.
    Dietrich, F.S., Mulligan, J., Hennessy, K., Yelton, M.A., Allen, E., Araujo, R., Aviles, E., Berno, A., Brennan, T., Carpenter, J., Chen, E., Cherry, J.M., Chung, E., Duncan, M., Guzman, E., Hartzell, G., Hunicke-Smith, S., Hyman, R.W., Kayser, A., Komp, C., Lashkari, D., Lew, H., Lin, D., Mosedale, D., Nakahara, K., Namath, A., Norgren, R. Oefner, P., Oh, C., Petel, F.X., Roberts, D., Sehl, P., Schramm, S., Shogren, T., Smith, V., Taylor, P., Wei, Y., Botstein, D., Davis, R.W. (1997). May 29, Nature, 387(6632 Suppl):78-81. [PubMed Abstract].

  42. Discovery and analysis of inflammatory disease-related genes using cDNA microarrays.
    Heller, R.A., Schena, M., Chai, A., Shalon, D., Bedilion, T., Gilmore, J., Woolley, D.E., Davis, R.W., (1997). Mar 18, Proc Natl Acad Sci U S A, 94(6):2150-2155. [Publisher Full Text].

  43. The nucleotide sequence of chromosome IV.
    Jacq, C., Davis, R.W., et al. (144 co-authors). (1997). Nature 387 suppl:75-78. [PubMed Abstract]

  44. Yeast microarrays for genome wide parallel genetic and gene expression analysis.
    Lashkari, D.A., DeRisi, J.L., McCusker, J.H., Namath, A.F., Gentile, C., Hwang, S.Y., Brown, P.O., Davis, R.W., (1997). Nov 25, Proc Natl Acad Sci U S A, 94(24):13057-13062. [Publisher Full Text].

  45. Whole genome analysis: experimental access to all genome sequenced segments through larger-scale efficient oligonucleotide synthesis and PCR.
    Lashkari, D.A., McCusker, J.H., Davis, R.W., (1997). Aug 19, Proc Natl Acad Sci U S A, 94(17):8945-8947. [Publisher Full Text].

  46. Ca(2+)-activated anion channels and membrane depolarizations induced by blue light and cold in Arabidopsis seedlings.
    Lewis, B.D., Karlin-Neumann, G., Davis, R.W., Spalding, E.P., (1997). Aug, Plant Physiol, 114(4):1327-1334. [PubMed Abstract].

  47. Denaturing HPLC-identified novel FBN1 mutations, polymorphisms, and sequence variants in Marfan syndrome and related connective tissue disorders.
    Liu, W.O., Oefner, P.J., Qian, C., Odom, R.S., Francke, U., (1997). Genet Test, 1(4):237-242. [PubMed Abstract].

  48. Automation for the Arabidopsis genome sequencing project.
    Marziali, A., Federspiel, N., and Davis, R.W., (1997). Trends in Plant Science, 2:71-74.

  49. Detection of single-base changes using a bioluminometric primer extension assay.
    Nyren, P., Karamohamed, S., Ronaghi, M., (1997). Jan 15, Anal Biochem, 244(2):367-373. [PubMed Abstract] DOI: 10.1006/abio.1996.9913.

  50. A crtB Homolog Essential for Photochromogenicity in Mycobacterium marinum: Isolation, Characterization, and Gene Disruption via Homologous Recombination.
    Ramakrishnan, L., Tran, H.T., Federspiel, N.A., Falkow, S., (1997). J. Bacteriol, 179:5862-5868.

  51. Quantification of alternatively spliced RUSH mRNA isoforms by QRT-PCR and IP-RP-HPLC analysis: a new approach to measuring regulated splicing efficiency.
    Robinson, C.A., Hayward-Lester, A., Hewetson, A., Oefner, P.J., Doris, P.A., Chilton, B.S., (1997). Oct 1, Gene, 198(1-2):1-4. [PubMed Abstract].

  52. Capillary electrophoresis measurement of metabolites in glycolysis.
    Shen, P., Hauri, D., Ross, J., Oefner, P.J., (1997). J. Cap. Elec, 3:155-163.

  53. Hepatitis G virus infection in hemodialysis patients and the effects of interferon treatment.
    Umlauft, F., Wong, D.T., Underhill, P.A., Oefner, P.J., Jin, L., Urbanek, M., Gruenewald, K., Greenberg, H.B., (1997). Nov, Am J Gastroenterol, 92(11):1986-1991. [PubMed Abstract].

  54. Mapping cloned sequences on YACs.
    Agyare, F.D., Lagos, G., Lashkari, D., Davis, R.W., Lemieux, B., (1998). Methods Mol Biol, 82:199-208.

  55. A genome-wide transcriptional analysis of the mitotic cell cycle.
    Cho, R.J., Campbell, M.J., Winzeler, E.A., Steinmetz, L., Conway, A., Wodicka, L., Wolfsberg, T.G., Gabrielian, A.E., Landsman, D., Lockhart, D.J., Davis, R.W., (1998). Jul, Mol Cell, 2(1):65-73. [PubMed Abstract].

  56. Parallel analysis of genetic selections using whole genome oligonucleotide arrays.
    Cho, R.J., Fromont-Racine, M., Wodicka, L., Feierbach, B., Stearns, T., Legrain, P., Lockhart, D.J., Davis, R.W., (1998). Mar 31, Proc Natl Acad Sci U S A, 95(7):3752-3757. [Publisher Full Text].

  57. Modeling and analysis of competitive RT-PCR.
    Hayward, A.L., Oefner, P.J., Sabatini, S., Kainer, D.B., Hinojos, C.A., Doris, P.A., (1998). Jun 1, Nucleic Acids Res, 26(11):2511-2518. [Publisher Full Text].

  58. Analyses of the NRAMP1 and IFN-gammaR1 genes in women with Mycobacterium avium-intracellulare pulmonary disease.
    Huang, J.H., Oefner, P.J., Adi, V., Ratnam, K., Ruoss, S.J., Trako, E., Kao, P.N., (1998). Feb, Am J Respir Crit Care Med, 157(2):377-381. [Publisher Full Text].

  59. Bioluminometric method for real-time detection of reverse transcriptase activity.
    Karamohammed, S., Ronaghi, M., Nyren, P., (1998). Feb, Biotechniques, 24(2):302-306. [PubMed Abstract].

  60. Blind analysis of denaturing high-performance liquid chromatography as a tool for mutation detection.
    O'Donovan, M.C., Oefner, P.J., Roberts, S.C., Austin, J., Hoogendoorn, B., Guy, C., Speight, G., Upadhyaya, M., Sommer, S.S., McGuffin, P., (1998). Aug 15, Genomics, 52(1):44-49. [PubMed Abstract].

  61. Phylogeny of the family Moraxellaceae by 16S rDNA sequence analysis, with special emphasis on differentiation of Moraxella species.
    Pettersson, B., Kodjo, A., Ronaghi, M., Uhlen, M., Tonjum, T., (1998). Jan, Int J Syst Bacteriol, 48 Pt 1:75-89. [PubMed Abstract].

  62. PCR-introduced loop structure as primer in DNA sequencing.
    Ronaghi, M., Pettersson, B., Uhlen, M., Nyren, P., (1998). Nov, Biotechniques, 25(5):876-878, 880-872, 884. [PubMed Abstract].

  63. A sequencing method based on real-time pyrophosphate.
    Ronaghi, M., Uhlen, M., Nyren, P., (1998). Jul 17, Science, 281(5375):363, 365. [Publisher Full Text].

  64. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis.
    Stephens, R.S., Kalman, S., Lammel, C., Fan, J., Marathe, R., Aravind, L., Mitchell, W., Olinger, L., Tatusov, R.L., Zhao, Q., Koonin, E.V., Davis, R.W., (1998). Oct 23, Science, 282(5389):754-759. [Publisher Full Text].

  65. An automated hydrodynamic process for controlled, unbiased DNA shearing.
    Thorstenson, Y.R., Hunicke-Smith, S.P., Oefner, P.J., Davis, R.W., (1998). Aug, Genome Res, 8(8):848-855. [Publisher Full Text].

  66. BRCA1-related breast cancer in Austrian breast and ovarian cancer families: specific BRCA1 mutations and pathological characteristics.
    Wagner, T.M., Moslinger, R.A., Muhr, D., Langbauer, G., Hirtenlehner, K., Concin, H., Doeller, W., Haid, A., Lang, A.H., Mayer, P., Ropp, E., Kubista, E., Amirimani, B., Helbich, T., Becherer, A., Scheiner, O., Breiteneder, H., Borg, A., Devilee, P., Oefner, P., Zielinski, C., (1998). Jul 29, Int J Cancer, 77(3):354-360. [Publisher Abstract]. Multicenter Study

  67. Direct allelic variation scanning of the yeast genome.
    Kalman, S., McCullough, M.J., McCusker, J.H., Stevens, D.A., Wodicka, L., Lockhart, D.J., Davis, R.W., (1998). Aug 21, Science, 281(5380):1194-1197. [Publisher Full Text].

  68. On the in vivo function of the RecA ATPase.
    Campbell, M.J., Davis, R.W., (1999). Feb 19, J Mol Biol, 286(2):437-445. [PubMed Abstract].

  69. Toxic mutations in the recA gene of E. coli prevent proper chromosome segregation.
    Campbell, M.J., Davis, R.W., (1999). Feb 19, J Mol Biol, 286(2):417-435. [PubMed Abstract].

  70. Genome-wide mapping with biallelic markers in Arabidopsis thaliana.
    Cho, R.J., Mindrinos, M., Richards, D.R., Sapolsky, R.J., Anderson, M., Drenkard, E., Dewdney, J., Reuber, T.L., Stammers, M., Federspiel, N., Theologis, A., Yang, W.H., Hubbell, E., Au, M., Chung, E.Y., Lashkari, D., Lemieux, B., Dean, C., Lipshutz, R.J., Ausubel, F.M., Davis, R.W., Oefner, P.J., (1999). Oct, Nat Genet, 23(2):203-207. [Publisher Full Text].

  71. Genomic profiling of drug sensitivities via induced haploinsufficiency.
    Giaever, G., Shoemaker, D.D., Jones, T.W., Liang, H., Winzeler, E.A., Astromoff, A., Davis, R.W., (1999). Mar, Nat Genet, 21(3):278-283. [Publisher Full Text].

  72. Identification by denaturing high-performance liquid chromatography of numerous polymorphisms in a candidate region for multiple sclerosis susceptibility.
    Giordano, M., Oefner, P.J., Underhill, P.A., Cavalli Sforza, L.L., Tosi, R., Richiardi, P.M., (1999). Mar 15, Genomics, 56(3):247-253. [PubMed Abstract].

  73. The mouse mahogany locus encodes a transmembrane form of human attractin.
    Gunn, T.M., Miller, K.A., He, L., Hyman, R.W., Davis, R.W., Azarani, A., Schlossman, S.F., Duke-Cohan, J.S., Barsh, G.S., (1999). Mar 11, Nature, 398(6723):152-156. [Publisher Full Text].

  74. Altered sodium pump alpha and gamma subunit gene expression in nephron segments from hypertensive rats.
    Hayward, A.L., Hinojos, C.A., Nurowska, B., Hewetson, A., Sabatini, S., Oefner, P.J., Doris, P.A., (1999). Aug, J Hypertens, 17(8):1081-1087. [PubMed Abstract].

  75. Genotyping single nucleotide polymorphisms by primer extension and high performance liquid chromatography.
    Hoogendoorn, B., Owen, M.J., Oefner, P.J., Williams, N., Austin, J., O'Donovan, M.C., (1999). Jan, Hum Genet, 104(1):89-93. [Publisher].

  76. Distribution of haplotypes from a chromosome 21 region distinguishes multiple prehistoric human migrations.
    Jin, L., Underhill, P.A., Doctor, V., Davis, R.W., Shen, P., Cavalli-Sforza, L.L., Oefner, P.J., (1999). Mar 30, Proc Natl Acad Sci U S A, 96(7):3796-3800. [Publisher Full Text].

  77. Optimal temperature selection for mutation detection by denaturing HPLC and comparison to single-stranded conformation polymorphism and heteroduplex analysis.
    Jones, A.C., Austin, J., Hansen, N., Hoogendoorn, B., Oefner, P.J., Cheadle, J.P., O'Donovan, M.C., (1999). Aug, Clin Chem, 45(8 Pt 1):1133-1140. [Publisher Full Text].

  78. Comparative genomes of Chlamydia pneumoniae and C. trachomatis.
    Kalman, S., Mitchell, W., Marathe, R., Lammel, C., Fan, J., Hyman, R.W., Olinger, L., Grimwood, J., Davis, R.W., Stephens, R.S., (1999). Apr, Nat Genet, 21(4):385-389. [Publisher Full Text].

  79. Production, purification, and luminometric analysis of recombinant Saccharomyces cerevisiae MET3 adenosine triphosphate sulfurylase expressed in Escherichia coli.
    Karamohamed, S., Nilsson, J., Nourizad, K., Ronaghi, M., Pettersson, B., Nyren, P., (1999). Apr, Protein Expr Purif, 15(3):381-388. [Publisher] DOI: 10.1006/prep.1999.1032.

  80. An automated sample preparation system for large-scale DNA sequencing.
    Marziali, A., Willis, T.D., Federspiel, N.A., Davis, R.W., (1999). May, Genome Res, 9(5):457-462. [Publisher Full Text].

  81. An arrayable flow-through microcentrifuge for high-throughput instrumentation.
    Marziali, A., Willis, T.D., Davis, R.W., (1999). Jan 5, Proc Natl Acad Sci U S A, 96(1):61-66. [Publisher Full Text].

  82. Analyses of secondary structures in DNA by pyrosequencing.
    Ronaghi, M., Nygren, M., Lundeberg, J., Nyren, P., (1999). Feb 1, Anal Biochem, 267(1):65-71. [Publisher] DOI: 10.1006/abio.1998.2978.

  83. Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age.
    Su, B., Xiao, J., Underhill, P., Deka, R., Zhang, W., Akey, J., Huang, W., Shen, D., Lu, D., Luo, J., Chu, J., Tan, J., Shen, P., Davis, R., Cavalli-Sforza, L., Chakraborty, R., Xiong, M., Du, R., Oefner, P., Chen, Z., Jin, L., (1999). Dec, Am J Hum Genet, 65(6):1718-1724. [Publisher].

  84. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae.
    ter Linde, J.J., Liang, H., Davis, R.W., Steensma, H.Y., van Dijken, J.P., Pronk, J.T., (1999). Dec, J Bacteriol, 181(24):7409-7413. [Publisher Full Text].

  85. Denaturing high-performance liquid chromatography detects reliably BRCA1 and BRCA2 mutations.
    Wagner, T., Stoppa-Lyonnet, D., Fleischmann, E., Muhr, D., Pages, S., Sandberg, T., Caux, V., Moeslinger, R., Langbauer, G., Borg, A., Oefner, P., (1999). Dec 15, Genomics, 62(3):369-376. [PubMed Abstract].

  86. Global sequence diversity of BRCA2: analysis of 71 breast cancer families and 95 control individuals of worldwide populations.
    Wagner, T.M., Hirtenlehner, K., Shen, P., Moeslinger, R., Muhr, D., Fleischmann, E., Concin, H., Doeller, W., Haid, A., Lang, A.H., Mayer, P., Petru, E., Ropp, E., Langbauer, G., Kubista, E., Scheiner, O., Underhill, P., Mountain, J., Stierer, M., Zielinski, C., Oefner, P., (1999). Mar, Hum Mol Genet, 8(3):413-423. [Publisher Full Text].

  87. Whole genome genetic-typing in yeast using high-density oligonucleotide arrays.
    Winzeler, E.A., Lee, B., McCusker, J.H., Davis, R.W., (1999). Parasitology, 118 Suppl:S73-80. [PubMed Abstract].

  88. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.
    Winzeler, E.A., Shoemaker, D.D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J.D., Bussey, H., Chu, A.M., Connelly, C., Davis, K., Dietrich, F., Dow, S.W., El Bakkoury, M., Foury, F., Friend, S.H., Gentalen, E., Giaever, G., Hegemann, J.H., Jones, T., Laub, M., Liao, H., Davis, R.W., et al., (1999). Aug 6, Science, 285(5429):901-906. [PubMed Abstract].

  89. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays.
    Aharoni, A., Keizer, L.C., Bouwmeester, H.J., Sun, Z., Alvarez-Huerta, M., Verhoeven, H.A., Blaas, J., van Houwelingen, A.M., De Vos, R.C., van der Voet, H., Jansen, R.C., Guis, M., Mol, J., Davis, R.W., Schena, M., van Tunen, A.J., O'Connell, A.P., (2000). May, Plant Cell, 12(5):647-662. [Publisher Full Text].

  90. Analysis of the p53 tumor suppressor gene by pyrosequencing.
    Ahmadian, A., Lundeberg, J., Nyren, P., Uhlen, M., Ronaghi, M., (2000). Jan, Biotechniques, 28(1):140-144, 146-147. [PubMed Abstract].

  91. A simple procedure for the analysis of single nucleotide polymorphisms facilitates map-based cloning in Arabidopsis.
    Drenkard, E., Richter, B.G., Rozen, S., Stutius, L.M., Angell, N.A., Mindrinos, M., Cho, R.J., Oefner, P.J., Davis, R.W., Ausubel, F.M., (2000). Dec, Plant Physiol, 124(4):1483-1492. [Publisher Full Text].

  92. Real-time PCR-based method for assaying the purity of bacterial artificial chromosome preparations.
    Foreman, P.K., Davis, R.W., (2000). Sep, Biotechniques, 29(3):410-412.

  93. Mutation detection by pyrosequencing: sequencing of exons 5-8 of the p53 tumor suppressor gene.
    Garcia, C.A., Ahmadian, A., Gharizadeh, B., Lundeberg, J., Ronaghi, M., Nyren, P., (2000). Aug 8, Gene, 253(2):249-257. [Publisher].

  94. Method enabling pyrosequencing on double-stranded DNA.
    Nordstrom, T., Nourizad, K., Ronaghi, M., Nyren, P., (2000). Jul 1, Anal Biochem, 282(2):186-193. [Publisher] DOI: 10.1006/abio.2000.4603.

  95. Direct analysis of single-nucleotide polymorphism on double-stranded DNA by pyrosequencing.
    Nordstrom, T., Ronaghi, M., Forsberg, L., de Faire, U., Morgenstern, R., Nyren, P., (2000). Apr, Biotechnol Appl Biochem, 31 ( Pt 2):107-112. [Publisher].

  96. Polymorphism in the pertussis toxin promoter region affecting the DNA-based diagnosis of Bordetella infection.
    Nygren, M., Reizenstein, E., Ronaghi, M., Lundeberg, J., (2000). Jan, J Clin Microbiol, 38(1):55-60. [Publisher Full Text].

  97. Allelic discrimination by denaturing high-performance liquid chromatography.
    Oefner, P.J., (2000). Mar 10, J Chromatogr B Biomed Sci Appl, 739(2):345-355. [PubMed Abstract].

  98. DAtA: database of Arabidopsis thaliana annotation.
    Palm, C.J., Federspiel, N.A., Davis, R.W., (2000). Jan 1, Nucleic Acids Res, 28(1):102-103. [Publisher Full Text].

  99. The core meiotic transcriptome in budding yeasts.
    Primig, M., Williams, R.M., Winzeler, E.A., Tevzadze, G.G., Conway, A.R., Hwang, S.Y., Davis, R.W., Esposito, R.E., (2000). Dec, Nat Genet, 26(4):415-423. [Publisher Full Text].

  100. Improved performance of pyrosequencing using single-stranded DNA-binding protein.
    Ronaghi, M., (2000). Nov 15, Anal Biochem, 286(2):282-288. [PubMed Abstract] DOI: 10.1006/abio.2000.4808.

  101. The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective.
    Semino, O., Passarino, G., Oefner, P.J., Lin, A.A., Arbuzova, S., Beckman, L.E., De Benedictis, G., Francalacci, P., Kouvatsi, A., Limborska, S., Marcikiae, M., Mika, A., Mika, B., Primorac, D., Santachiara-Benerecetti, A.S., Cavalli-Sforza, L.L., Underhill, P.A., (2000). Nov 10, Science, 290(5494):1155-1159. [Publisher Full Text]. Historical Article

  102. Prevalence of small inversions in yeast gene order evolution.
    Seoighe, C., Federspiel, N., Jones, T., Hansen, N., Bivolarovic, V., Surzycki, R., Tamse, R., Komp, C., Huizar, L., Davis, R.W., Scherer, S., Tait, E., Shaw, D.J., Harris, D., Murphy, L., Oliver, K., Taylor, K., Rajandream, M.A., Barrell, B.G., Wolfe, K.H., (2000). Dec 19, Proc Natl Acad Sci U S A, 97(26):14433-14437. [Publisher Full Text].

  103. Population genetic implications from sequence variation in four Y chromosome genes.
    Shen, P., Wang, F., Underhill, P.A., Franco, C., Yang, W.H., Roxas, A., Sung, R., Lin, A.A., Hyman, R.W., Vollrath, D., Davis, R.W., Cavalli-Sforza, L.L., Oefner, P.J., (2000). Jun 20, Proc Natl Acad Sci U S A, 97(13):7354-7359. [Publisher Full Text].

  104. Mutational analyses of BRCA1 and BRCA2 in Ashkenazi and non-Ashkenazi Jewish women with familial breast and ovarian cancer.
    Shiri-Sverdlov, R., Oefner, P., Green, L., Baruch, R.G., Wagner, T., Kruglikova, A., Haitchick, S., Hofstra, R.M., Papa, M.Z., Mulder, I., Rizel, S., Bar Sade, R.B., Dagan, E., Abdeen, Z., Goldman, B., Friedman, E., (2000). Dec, Hum Mutat, 16(6):491-501. [PubMed Abstract].

  105. Cloning of the Arabidopsis RSF1 gene by using a mapping strategy based on high-density DNA arrays and denaturing high-performance liquid chromatography.
    Spiegelman, J.I., Mindrinos, M.N., Fankhauser, C., Richards, D., Lutes, J., Chory, J., Oefner, P.J., (2000). Dec, Plant Cell, 12(12):2485-2498. [Publisher Full Text].

  106. High-accuracy DNA sequence variation screening by DHPLC.
    Spiegelman, J.I., Mindrinos, M.N., Oefner, P.J., (2000). Nov, Biotechniques, 29(5):1084-1090, 1092. [PubMed Abstract].

  107. Polynesian origins: insights from the Y chromosome.
    Su, B., Jin, L., Underhill, P., Martinson, J., Saha, N., McGarvey, S.T., Shriver, M.D., Chu, J., Oefner, P., Chakraborty, R., Deka, R., (2000). Jul 18, Proc Natl Acad Sci U S A, 97(15):8225-8228. [Publisher Full Text].

  108. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
    Theologis, A., Ecker, J.R., Palm, C.J., Federspiel, N.A., Kaul, S., White, O., Alonso, J., Altafi, H., Araujo, R., Bowman, C.L., Brooks, S.Y., Buehler, E., Chan, A., Chao, Q., Chen, H., Cheuk, R.F., Chin, C.W., Chung, M.K., Conn, L., Conway, A.B., Conway, A.R., Creasy, T.H., Dewar, K., Dunn, P., Etgu, P., et al., (2000). Dec 14, Nature, 408(6814):816-820. [Publisher Full Text].

  109. Analysis of the genome of the flowering plant Arabidopsis thaliana. The Arabidopsis Genome Initiative (AGI). (2000) Nature. 408(6814):796-815. [Publisher Full Text]

  110. Recent common ancestry of human Y chromosomes: evidence from DNA sequence data.
    Thomson, R., Pritchard, J.K., Shen, P., Oefner, P.J., Feldman, M.W., (2000). Jun 20, Proc Natl Acad Sci U S A, 97(13):7360-7365. [Publisher Full Text].

  111. Y chromosome sequence variation and the history of human populations.
    Underhill, P.A., Shen, P., Lin, A.A., Jin, L., Passarino, G., Yang, W.H., Kauffman, E., Bonne-Tamir, B., Bertranpetit, J., Francalacci, P., Ibrahim, M., Jenkins, T., Kidd, J.R., Mehdi, S.Q., Seielstad, M.T., Wells, R.S., Piazza, A., Davis, R.W., Feldman, M.W., Cavalli-Sforza, L.L., Oefner, P.J., (2000). Nov, Nat Genet, 26(3):358-361. [Publisher Full Text].

  112. Attitude towards prophylactic surgery and effects of genetic counselling in families with BRCA mutations.
    Austrian Hereditary Breast and Ovarian Cancer Group. Wagner, T.M., Moslinger, R., Langbauer, G., Ahner, R., Fleischmann, E., Auterith, A., Friedmann, A., Helbich, T., Zielinski, C., Pittermann, E., Seifert, M., Oefner, P., (2000). Apr, Br J Cancer, 82(7):1249-1253. [Publisher].

  113. Functional analysis of the yeast genome by precise deletion and parallel phenotypic characterization.
    Winzeler, E.A., Liang, H., Shoemaker, D.D., Davis, R.W., (2000). Novartis Found Symp, 229:105-109; discussion 109-111.

  114. Infrequent Genetic Exchange and Recombination in the Mitochondrial Genome of Candida albicans.
    Anderson, J.B., Wickens, C., Khan, M., Cowen, L.E., Federspiel, N., Jones, T., Kohn, L.M. (2001) Journal of Bacteriology Feb, 183(3):865-872. [Publisher Full Text].

  115. Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.
    Barnett, M.J., Fisher, R.F., Jones, T., Komp, C., Abola, A.P., Barloy-Hubler, F., Bowser, L., Capela, D., Galibert, F., Gouzy, J., Gurjal, M., Hong, A., Huizar, L., Hyman, R.W., Kahn, D., Kahn, M.L., Kalman, S., Keating, D.H., Palm, C., Peck, M.C., Surzycki, R., Wells, D.H., Yeh, K.C., Davis, R.W., Federspiel, N.A., et al., (2001). Aug 14, Proc Natl Acad Sci U S A, 98(17):9883-9888. [Publisher Full Text].

  116. A genome-wide screen in Saccharomyces cerevisiae for genes affecting UV radiation sensitivity.
    Birrell, G.W., Giaever, G., Chu, A.M., Davis, R.W., Brown, J.M., (2001). Oct 23, Proc Natl Acad Sci U S A, 98(22):12608-12613. [Publisher Full Text]

  117. High-resolution analysis of human Y-chromosome variation shows a sharp discontinuity and limited gene flow between northwestern Africa and the Iberian Peninsula.
    Bosch, E., Calafell, F., Comas, D., Oefner, P.J., Underhill, P.A., Bertranpetit, J., (2001). Apr, Am J Hum Genet, 68(4):1019-1029. [PubMed Abstract]

  118. Transcriptional regulation and function during the human cell cycle.
    Cho, R.J., Huang, M., Campbell, M.J., Dong, H., Steinmetz, L., Sapinoso, L., Hampton, G., Elledge, S.J., Davis, R.W., Lockhart, D.J., (2001). Jan, Nat Genet, 27(1):48-54. [Publisher Full Text]

  119. Interpreting epidemiological research: blinded comparison of methods used to estimate the prevalence of inherited mutations in BRCA1.
    Eng, C., Brody, L.C., Wagner, T.M.U., Devilee, P., Vijg, J., Szabo, C., Tavtigian, S.V., Nathanson, K.L., Ostrander, E., Frank, T.S., Zaucha, R., Suter, N.M., Hoogenboom, M., van Eijk, R., Cornelisse, C.J., van Orsouw, N.J., Torres, L., Vrins, E., McGrath, S., Moeslinger, R., Oefner, P.J., Muhr, D., Deffenbaugh, A.M., Zawacki, R.K., (2001). J. Med. Genet, 38:824-833.

  120. The composite genome of the legume symbiont Sinorhizobium meliloti.
    Galibert, F., Finan, T.M., Long, S.R., Puhler, A., Abola, P., Ampe, F., Barloy-Hubler, F., Barnett, M.J., Becker, A., Boistard, P., Bothe, G., Boutry, M., Bowser, L., Buhrmester, J., Cadieu, E., Capela, D., Chain, P., Cowie, A., Davis, R.W., Dreano, S., Federspiel, N.A., Fisher, R.F., Gloux, S., Godrie, T., Goffeau, A., et al., (2001). Jul 27, Science, 293(5530):668-672. [Publisher Full Text].

  121. Origins and divergence of the Roma (gypsies).
    Gresham, D., Morar, B., Underhill, P.A., Passarino, G., Lin, A.A., Wise, C., Angelicheva, D., Calafell, F., Oefner, P.J., Shen, P., Tournev, I., de Pablo, R., Kucinskas, V., Perez-Lezaun, A., Marushiakova, E., Popov, V., Kalaydjieva, L., (2001). Dec, Am J Hum Genet, 69(6):1314-1331. [PubMed Abstract].

  122. Mutation detection by capillary denaturing high-performance liquid chromatography using monolithic columns.
    Huber, C.G., Premstaller, A., Xiao, W., Oberacher, H., Bonn, G.K., Oefner, P.J., (2001). Jan 30, J Biochem Biophys Methods, 47(1-2):5-19. [Publisher]

  123. African origin of modern humans in East Asia: a tale of 12,000 Y chromosomes.
    Ke, Y., Su, B., Song, X., Lu, D., Chen, L., Li, H., Qi, C., Marzuki, S., Deka, R., Underhill, P., Xiao, C., Shriver, M., Lell, J., Wallace, D., Wells, R.S., Seielstad, M., Oefner, P., Zhu, D., Jin, J., Huang, W., Chakraborty, R., Chen, Z., Jin, L., (2001). May 11, Science, 292(5519):1151-1153. [Publisher Full Text].

  124. Initial sequencing and analysis of the human genome.
    Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W., Funke, R., Gage, D., Harris, K., Heaford, A., Howland, J., Kann, L., Lehoczky, J., LeVine, R., McEwan, P., McKernan, K., Meldrim, J., Mesirov, J.P., Miranda, C., Morris, W., Naylor, J., et al., (2001). Feb 15, Nature, 409(6822):860-921. [PubMed Abstract].

  125. A method for parallel, automated, thermal cycling of submicroliter samples.
    Nakane, J., Broemeling, D., Donaldson, R., Marziali, A., Willis, T.D., O'Keefe, M., Davis, R.W., (2001). Mar, Genome Res, 11(3):441-447. [Publisher Full Text].

  126. Method enabling fast partial sequencing of cDNA clones.
    Nordstrom, T., Gharizadeh, B., Pourmand, N., Nyren, P., Ronaghi, M., (2001). May 15, Anal Biochem, 292(2):266-271. [Publisher].

  127. Quantification of HIV-1 using multiple quantitative polymerase chain reaction standards and bioluminometric detection.
    Nygren, M., Ronaghi, M., Nyren, P., Albert, J., Lundeberg, J., (2001). Jan 1, Anal Biochem, 288(1):28-38. [Publisher] DOI: 10.1006/abio.2000.4871.

  128. On-Line Liquid Chromatography Mass Spectrometry: A Useful Tool for the Detection of DNA Sequence Variation.
    This work was financially supported by the Austrian Science Fund (P-14133-PHY) and the National Institutes of Health (HG01932). The suggestion of Dr. Jeff van Ness from the Keck Graduate Institute of Applied Life Sciences in Claremont, CA, USA, to utilize butyldimethylamine for IP-RP-HPLC separations is gratefully acknowledged. Oberacher, H., Oefner, P.J., Parson, W., Huber, C.G., (2001). Oct 15, Angew Chem Int Ed Engl, 40(20):3828-3830.

  129. The Werner syndrome gene and global sequence variation.
    Passarino, G., Shen, P., Van Kirk, J.B., Lin, A.A., De Benedictis, G., Cavalli Sforza, L.L., Oefner, P.J., Underhill, P.A., (2001). Jan 1, Genomics, 71(1):118-122. [PubMed Abstract].

  130. Temperature-modulated array high-performance liquid chromatography.
    Premstaller, A., Xiao, W., Oberacher, H., O'Keefe, M., Stern, D., Willis, T., Huber, C.G., Oefner, P.J., (2001). Nov, Genome Res, 11(11):1944-1951. [Publisher Full Text].

  131. Replication dynamics of the yeast genome.
    Raghuraman, M.K., Winzeler, E.A., Collingwood, D., Hunt, S., Wodicka, L., Conway, A., Lockhart, D.J., Davis, R.W., Brewer, B.J., Fangman, W.L., (2001). Oct 5, Science, 294(5540):115-121. [Publisher Full Text].

  132. Global analysis of ATM polymorphism reveals significant functional constraint.
    Thorstenson, Y.R., Shen, P., Tusher, V.G., Wayne, T.L., Davis, R.W., Chu, G., Oefner, P.J., (2001). Aug, Am J Hum Genet, 69(2):396-412. [Publisher].

  133. Genomic evidence for a complete sexual cycle in Candida albicans.
    Tzung, K.W., Williams, R.M., Scherer, S., Federspiel, N., Jones, T., Hansen, N., Bivolarevic, V., Huizar, L., Komp, C., Surzycki, R., Tamse, R., Davis, R.W., Agabian, N., (2001). Mar 13, Proc Natl Acad Sci U S A, 98(6):3249-3253. [Publisher Full Text].

  134. The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations.
    Underhill, P.A., Passarino, G., Lin, A.A., Shen, P., Mirazon Lahr, M., Foley, R.A., Oefner, P.J., Cavalli-Sforza, L.L., (2001). Jan, Ann Hum Genet, 65(Pt 1):43-62. [Publisher].

  135. Maori origins, Y-chromosome haplotypes and implications for human history in the Pacific.
    Underhill, P.A., Passarino, G., Lin, A.A., Marzuki, S., Oefner, P.J., Cavalli-Sforza, L.L., Chambers, G.K., (2001). Apr, Hum Mutat, 17(4):271-280. [PubMed Abstract].

  136. Multiplex capillary denaturing high-performance liquid chromatography with laser-induced fluorescence detection.
    Xiao, W., Stern, D., Jain, M., Huber, C.G., Oefner, P.J., (2001). Jun, Biotechniques, 30(6):1332-1338. [PubMed Abstract].

  137. Application of Genetic Algorithm to Chemical Kinetics: Systematic Determination of Reaction Mechanism and Rate Coefficients for a Complex Reaction Network.
    Tsuchiya, M. Ross, J. (2001). J.Phys.Chem. A, 105(16):4052-4058. [Publisher Full Text]

  138. Denaturing HPLC of Nucleic Acids
    Premstaller, A., Oefner, P.J., (2002). LCGC Europe, July 2002 [Publisher], [PDF]

  139. Gene expression during the life cycle of Drosophila melanogaster.
    Arbeitman, M.N., Furlong, E.E., Imam, F., Johnson, E., Null, B.H., Baker, B.S., Krasnow, M.A., Scott, M.P., Davis, R.W., White, K.P., (2002). Sep 27, Science, 297(5590):2270-2275. [Publisher Full Text].

  140. Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents.
    Birrell, G.W., Brown, J.A., Wu, H.I., Giaever, G., Chu, A.M., Davis, R.W., Brown, J.M., (2002). Jun 25, Proc Natl Acad Sci U S A, 99(13):8778-8783. [Publisher Full Text].

  141. Gene-expression profile comparisons distinguish seven organs of maize.
    Cho, Y., Fernandes, J., Kim, S.H., Walbot, V., (2002). Aug 29, Genome Biol, 3(9):RESEARCH0045. [Publisher Full Text].

  142. A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes.
    Cruciani, F., Santolamazza, P., Shen, P., Macaulay, V., Moral, P., Olckers, A., Modiano, D., Holmes, S., Destro-Bisol, G., Coia, V., Wallace, D.C., Oefner, P.J., Torroni, A., Cavalli-Sforza, L.L., Scozzari, R., Underhill, P.A., (2002). May, Am J Hum Genet, 70(5):1197-1214. [PubMed Abstract].

  143. Comparison of RNA expression profiles based on maize expressed sequence tag frequency analysis and micro-array hybridization.
    Fernandes, J., Brendel, V., Gai, X., Lal, S., Chandler, V.L., Elumalai, R.P., Galbraith, D.W., Pierson, E.A., Walbot, V., (2002). Mar, Plant Physiol, 128(3):896-910. [Publisher Full Text].

  144. Evolutionary rate in the protein interaction network.
    Fraser, H.B., Hirsh, A.E., Steinmetz, L.M., Scharfe, C., Feldman, M.W., (2002). Apr 26, Science, 296(5568):750-752. [Publisher Full Text].

  145. Genome sequence of the human malaria parasite Plasmodium falciparum.
    Gardner, M.J., Hall, N., Fung, E., White, O., Berriman, M., Hyman, R.W., Carlton, J.M., Pain, A., Nelson, K.E., Bowman, S., Paulsen, I.T., James, K., Eisen, J.A., Rutherford, K., Salzberg, S.L., Craig, A., Kyes, S., Chan, M.S., Nene, V., Shallom, S.J., Suh, B., Peterson, J., Angiuoli, S., Pertea, M., Allen, J., Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B. (2002). Oct 3, Nature, 419(6906):498-511. [PubMed Abstract], [Publisher Full Text]

  146. Long-read pyrosequencing using pure 2'-deoxyadenosine-5'-O'-(1-thiotriphosphate) Sp-isomer.
    Gharizadeh, B., Nordstrom, T., Ahmadian, A., Ronaghi, M., Nyren, P., (2002). Feb 1, Anal Biochem, 301(1):82-90.[Publisher] DOI: 10.1006/abio.2001.5494.

  147. Functional profiling of the Saccharomyces cerevisiae genome.
    Giaever, G., Chu, A.M., Ni, L., Connelly, C., Riles, L., Veronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., Andre, B., Arkin, A.P., Astromoff, A., El-Bakkoury, M., Bangham, R., Benito, R., Brachat, S., Campanaro, S., Curtiss, M., Davis, K., Deutschbauer, A., Entian, K.D., Flaherty, P., Foury, F., Garfinkel, D.J., Gerstein, M., et al., (2002). Jul 25, Nature, 418(6896):387-391. [Publisher Full Text].

  148. Identification and preliminary characterization of mouse Adam33.
    Gunn, T.M., Azarani, A., Kim, P.H., Hyman, R.W., Davis, R.W., Barsh, G.S., (2002). BMC Genet, 3(1):2. [Publisher].

  149. Sequence of Plasmodium falciparum chromosome 12.
    Hyman, R.W., Fung, E., Conway, A., Kurdi, O., Mao, J., Miranda, M., Nakao, B., Rowley, D., Tamaki, T., Wang, F., Davis, R.W., (2002). Oct 3, Nature, 419(6906):534-537. [PubMed Abstract], [Publisher Full Text]

  150. Mutation of the ATM gene is not involved in the pathogenesis of either follicle center lymphoma or its transformation to higher-grade lymphoma.
    Lossos, I.S., Thorstenson, Y.R., Wayne, T.L., Oefner, P.J., Levy, R., Chu, G., (2002). May, Leuk Lymphoma, 43(5):1079-1085. [PubMed Abstract].

  151. Transformation of follicular lymphoma to diffuse large-cell lymphoma: alternative patterns with increased or decreased expression of c-myc and its regulated genes.
    Lossos, I.S., Alizadeh, A.A., Diehn, M., Warnke, R., Thorstenson, Y., Oefner, P.J., Brown, P.O., Botstein, D., Levy, R., (2002). Jun 25, Proc Natl Acad Sci U S A, 99(13):8886-8891. [Publisher Full Text].

  152. The extent of linkage disequilibrium in Arabidopsis thaliana.
    Nordborg, M., Borevitz, J.O., Bergelson, J., Berry, C.C., Chory, J., Hagenblad, J., Kreitman, M., Maloof, J.N., Noyes, T., Oefner, P.J., Stahl, E.A., Weigel, D., (2002). Feb, Nat Genet, 30(2):190-193. [Publisher Full Text].

  153. Re-sequencing of multiple single nucleotide polymorphisms by liquid chromatography-electrospray ionization mass spectrometry.
    Oberacher, H., Oefner, P.J., Holzl, G., Premstaller, A., Davis, K., Huber, C.G., (2002). Jul 15, Nucleic Acids Res, 30(14):e67. [PubMed Abstract].

  154. Multiplex Pyrosequencing.
    Pourmand, N., Elahi, E., Davis, R.W., Ronaghi, M., (2002). Apr 1, Nucleic Acids Res, 30(7):e31. [Publisher Full Text].

  155. Capillary array high-performance liquid chromatography of nucleic acids and proteins.
    Premstaller, A., Oefner, P.J., Oberacher, H., Huber, C.G., (2002). Sep 15, Anal Chem, 74(18):4688-4693. [PubMed Abstract].

  156. Multiplex analysis of single-nucleotide extension products on a 16-capillary, denaturing, high-performance liquid chromatography array.
    Premstaller, A., Oberacher, H., Rickert, A., Huber, C.G., Oefner, P.J., (2002). Jun, Genomics, 79(6):793-798.[PubMed Abstract].

  157. Genotyping of Snps in a polyploid genome by pyrosequencing.
    Rickert, A.M., Premstaller, A., Gebhardt, C., Oefner, P.J., (2002). Mar, Biotechniques, 32(3):592-593, 596-598, 600 passim. [PubMed Abstract].

  158. Discovery of single nucleotide polymorphisms and mutations by Pyrosequencing.
    Ronaghi, M., Elahi, E., (2002). Comparative and functional genomics, 3:51-56.

  159. Pyrosequencing for microbial typing.
    Ronaghi, M., Elahi, E., (2002). J. Chromatogr B Analyt Technol Biomed Life Sci.; Dec 25;782(1-2):67-72. [PubMed Abstract], [Publisher Full Text]

  160. Caution in the search for beta tubulin mutations.
    Sale, S., Oefner, P.J., Sikic, B.I. (2002). J. Natl. Cancer Inst.

  161. Conservation of the class I beta tubulin gene in human populations and lack of mutations in lung cancers and paclitaxel resistant ovarian cancers.
    Sale, S., Sung, R., Shen, P., Yu, K., Wang, Y., Duran, G.E., Kim, J.-H., Fojo, T., Oefner, P.J., Sikic, B.I., (2002). Mol. Cancer Ther., 1:215-225. [PubMed Abstract]

  162. Premature termination mutations in FBN1: distinct effects on differential allelic expression and on protein and clinical phenotypes.
    Schrijver, I., Liu, W., Odom, R., Brenn, T., Oefner, P., Furthmayr, H., Francke, U., (2002). Aug, Am J Hum Genet, 71(2):223-237. [PubMed Abstract].

  163. Population genetic implications from DNA polymorphism in random human genomic sequences.
    Shen, P., Buchholz, M., Sung, R., Roxas, A., Franco, C., Yang, W.H., Jagadeesan, R., Davis, K., Oefner, P.J., (2002). Sep, Hum Mutat, 20(3):209-217. [PubMed Abstract].

  164. Systematic screen for human disease genes in yeast.
    Steinmetz, L.M., Scharfe, C., Deutschbauer, A.M., Mokranjac, D., Herman, Z.S., Jones, T., Chu, A.M., Giaever, G., Prokisch, H., Oefner, P.J., Davis, R.W., (2002). Aug, Nat Genet, 31(4):400-404.[Supporting Web Site].

  165. Dissecting the architecture of a quantitative trait locus in yeast.
    Steinmetz, L.M., Sinha, H., Richards, D.R., Spiegelman, J.I., Oefner, P.J., McCusker, J.H., Davis, R.W., (2002). Mar 21, Nature, 416(6878):326-330. [Supporting Web Site].

  166. Frequentist estimation of coalescence times from nucleotide sequence data using a tree-based partition.
    Tang, H., Siegmund, D.O., Shen, P., Oefner, P.J., Feldman, M.W., (2002). May, Genetics, 161(1):447-459. [Publisher Full Text].

  167. Neutrality condition and response law for nonlinear reaction-diffusion equations, with application to population genetics.
    Vlad, M.O., Moran, F., Tsuchiya, M., Cavalli-Sforza, L.L., Oefner, P.J., Ross, J., (2002). Jun, Phys Rev E Stat Nonlin Soft Matter Phys, 65(6 Pt 1):061110. [PubMed Abstract].

  168. Bayesian analysis of systems with random chemical composition: renormalization-group approach to Dirichlet distributions and the statistical theory of dilution.
    Vlad, M.O., Tsuchiya, M., Oefner, P., Ross, J., (2002). Jan, Phys Rev E Stat Nonlin Soft Matter Phys, 65(1 Pt 1):011112. [PubMed Abstract].

  169. The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast.
    Williams, R.M., Primig, M., Washburn, B.K., Winzeler, E.A., Bellis, M., Sarrauste De Menthiere, C., Davis, R.W., Esposito, R.E., (2002). Oct 7, Proc Natl Acad Sci USA. [Publisher Full Text].

  170. Parallel phenotypic analysis of sporulation and postgermination growth in Saccharomyces cerevisiae.
    Deutschbauer, A.M., Williams, R.M., Chu, A.M., Davis, R.W., (2002). Nov 26, Proc Natl Acad Sci USA, 99(24):15530-15535. [PubMed Abstract]

  171. Yeast tRNA as carrier in the isolation of microscale RNA for global amplification and expression profiling.
    Wang QT, Xiao W, Mindrinos M, Davis RW.; (2002). Biotechniques 2002 Oct;33(4):788, 790, 792 passim

  172. Metabolic specialization associated with phenotypic switching in Candida albicans.
    Lan, C.Y., Newport, G., Murillo, L.A., Jones, T., Scherer, S., Davis, R.W., Agabian, N., (2002). Nov 12, Proc Natl Acad Sci U S A, 99(23):14907-14912. [PubMed Abstract]

  173. Polymerase chain reaction fidelity and denaturing high-performance liquid chromatography.
    Muhr D, Wagner T, Oefner PJ., (2002) J Chromatogr B Analyt Technol Biomed Life Sci. Dec 25;782(1-2):105-10. [PubMed Abstract], [Publisher Full Text]

  174. Sequence variation and the biological function of genes: methodological and biological considerations.
    Oefner PJ.; (2002) J Chromatogr B Analyt Technol Biomed Life Sci. Dec 25;782(1-2):3-25. [PubMed Abstract], [Publisher Full Text]

  175. Monolithic capillary columns for liquid chromatography-electrospray ionization mass spectrometry in proteomic and genomic research.
    Walcher W, Oberacher H, Troiani S, Holzl G, Oefner P, Zolla L, Huber CG. (2002) J Chromatogr B Analyt Technol Biomed Life Sci. Dec 25;782(1-2):111-25. [PubMed Abstract], [Publisher Full Text]

  176. ATM mutations on distinct SNP and STR haplotypes in ataxia-telangiectasia patients of differing ethnicities reveal ancestral founder effects
    Campbell, C., Mitui, M., Eng, L., Coutinho, G., Thorstenson, Y., Gatti, R.A. Hum Mutat. 2003 Jan;21(1):80-5. [PubMed Abstract], [Publisher]

  177. Denaturing HPLC of Nucleic Acids
    Premstaller A, Oefner P.J.; PharmaGenomics, Feb 1,2003, Cover Story [PDF]

  178. Experimental test of a method for determining causal connectivities of species in reactions.
    Torralba A.S., Yu K., Shen P., Oefner P.J., Ross J.; PNAS, published online before print Februray 7, 2003, Proc. Natl. Acad. Sci. USA, Vol. 100, Issue 4, 1494-1498, February 18, 2003 [Publisher Abstract] [Publisher Full Text]

  179. Denaturing high-performance liquid chromatography.
    Premstaller, A. & Oefner, P.J. (2003) Methods Mol Biol 212, 15-35. [PubMed]

  180. Determination of hepatitis C virus genotype by Pyrosequencing.
    Elahi E, Pourmand N, Chaung R, Rofoogaran A, Boisver J, Samimi-Rad K, Davis RW, Ronaghi M..J Virol Methods. 2003 May;109(2):171-6. [PubMed Abstract], [Publisher Full Text]

  181. Multiplexed genotyping with sequence-tagged molecular inversion probes.
    Hardenbol, P., Baner, J., Jain, M., Nilsson, M., Namsaraev, E. A., Karlin-Neumann, G. A., Fakhrai-Rad, H., Ronaghi, M., Willis, T. D., Landegren, U., Davis, R. W. Nat Biotechnol Jun;21(6):673-8 (2003). [PubMed Abstract], [Publisher Full Text]

  182. Mutation scanning by ion-pair reversed-phase high-performance liquid chromatography-electrospray ionization mass spectrometry (ICEMS).
    Oberacher, H., Huber, C.G. & Oefner, P.J. Hum Mutat 21, 86-95 (2003). [PubMed Abstract], [Publisher Abstract]

  183. Pyrosequencing for SNP genotyping.
    Ronaghi, M. (2003) Methods Mol Biol 212, 189-95. [PubMed]

  184. Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea.
    Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W.; Underhill, P., Shen, P., Oefner, P., Tommaseo-Ponzetta, M., Stoneking, M. Am J Hum Genet. 2003 Feb;72(2):281-302. Epub 2002 Jan 16. . [PubMed Abstract], [Publisher Full Text]

  185. Peopling of three Mediterranean islands (Corsica, Sardinia, and Sicily) inferred by Y-chromosome biallelic variability.
    Francalacci, P., Morelli, L., Underhill, P. A., Lillie, A. S., Passarino, G., Useli, A., Madeddu, R., Paoli, G., Tofanelli, S., Calo, C. M., Ghiani, M. E., Varesi, L., Memmi, M., Vona, G., Lin, A. A., Oefner, P., Cavalli-Sforza, L. L. Am J Phys Anthropol. 2003 Jul;121(3):270-9. [PubMed Abstract], [Publisher Full Text]

  186. Contributions of ATM Mutations to Familial Breast and Ovarian Cancer.
    Thorstenson, Y. R., Roxas, A., Kroiss, R., Jenkins, M. A., Yu, K. M., Bachrich, T., Muhr, D., Wayne, T. L., Chu, G., Davis, R. W., Wagner, T. M., Oefner, P. J. Cancer Res. 2003 Jun 15;63(12):3325-33. [PubMed Abstract], [Publisher Full Text]

  187. A chemical genomics approach to understanding drug action.
    Giaever, G. Trends Pharmacol Sci. 2003 Sep;24(9):444-6. [PubMed Abstract]

  188. 'Chemogenomics: tools for protein families' and 'Chemical genomics: chemical and biological integration'.
    Nislow, C., Giaever, G. Pharmacogenomics. 2003 Jan;4(1):15-8.

  189. Genotyping African haplotypes in ATM using a co-spotted single-base extension assay.
    Jain, M., Thorstenson, Y. R., Faulkner, D. M., Pourmand, N., Jones, T., Au, M., Oefner, P. J., White, K. P., Davis, R. W. Hum Mutat. 2003 Sep;22(3):214-21. [PubMed Abstract], [Publisher]

  190. Analysis of FAS (CD95) gene mutations in higher-grade transformation of follicle center lymphoma.
    Do, B., Lossos, I. S., Thorstenson, Y., Oefner, P.J., Levy, R. Leuk Lymphoma. 2003 Aug;44(8):1317-23. [PubMed Abstract]

  191. ZmDB, an integrated database for maize genome research.
    Dong, Q., Roy, L., Freeling, M., Walbot, V., Brendel, V. Nucleic Acids Res. 2003 Jan 1;31(1):244-7. [PubMed Abstract], [Publisher Full Text]

  192. Advantages of external periodic events to the evolution of biochemical oscillatory reactions.
    Tsuchiya, M., Ross, J. (2003). Proc. Natl. Acad. Sci. USA Aug 19; 100(17):9691-9695. [Publisher Full Text]

  193. Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Yamada, K., Lim, J., Dale, J. M., Chen, H., Shinn, P., Palm, C. J., Southwick, A. M., Wu, H. C., Kim, C., Nguyen, M., Pham, P., Cheuk, R., Karlin-Newmann, G., Liu, S. X., Lam, B., Sakano, H., Wu, T., Yu, G., Miranda, M., Quach, H. L., Tripp, M., Chang, C. H., Lee, J. M., Toriumi, M., Chan, M. M., Tang, C. C., Onodera, C. S., Deng, J. M., Akiyama, K., Ansari, Y., Arakawa, T., Banh, J., Banno, F., Bowser, L., Brooks, S., Carninci, P., Chao, Q., Choy, N., Enju, A., Goldsmith, A. D., Gurjal, M., Hansen, N. F., Hayashizaki, Y., Johnson-Hopson, C., Hsuan, V. W., Iida, K., Karnes, M., Khan, S., Koesema, E., Ishida, J., Jiang, P. X., Jones, T., Kawai, J., Kamiya, A., Meyers, C., Nakajima, M., Narusaka, M., Seki, M., Sakurai, T., Satou, M., Tamse, R., Vaysberg, M., Wallender, E. K., Wong, C., Yamamura, Y., Yuan, S., Shinozaki, K., Davis, R. W., Theologis, A., Ecker, J. R. (2003). Science. 2003 Oct 31;302(5646):842-6. [PubMed], [Publisher Full Text]

  194. A tRNA(Ala) mutation causing mitochondrial myopathy clinically resembling myotonic dystrophy.
    Horvath, R., Lochmuller, H., Scharfe, C., Do, B.H., Oefner, P.J., Muller-Hocker, J., Schoser, B.G., Pongratz, D., Auer, D.P., Jaksch, M. (2003). J. Med. Genet. 40, 752-757. [PubMed]

  195. First-generation SNP/InDel markers tagging loci for pathogen resistance in the potato genome.
    Rickert, A.M., Kim, J.H., Meyer, S., Nagel, A., Ballvora, A., Oefner, P.J., Gebhardt, C. (2003) Plant Biotechnology J. 1, 399-410.

  196. Applicability of tandem mass spectrometry to the automated comparative sequencing of 38- to 80-mer oligonucleotides.
    Oberacher, H., Mayr, B.M., Parson, W., Oefner, P.J., Huber, C.G. (2003). J Am Soc Mass Spectrom. 2004 Apr;15(4):510-22. [PubMed], [Publisher Abstract]

  197. A novel Y-chromosome variant puts an upper limit on the timing of first entry into the Americas.
    Seielstad, M., Yuldasheva, N., Singh, N., Underhill, P., Oefner, P., Shen, P., Wells, R. S. Am J Hum Genet. 2003 Sep;73(3):700-5. [Publisher]

  198. Comparative genetic history of Samaritan patri- and matrilineages based on Y-chromosome and mitochondrial DNA sequence variation. Shen, P., Lavi, T., Sengun, D., Chou, V., Kumm, J., Gefel, D., Shpirer, I., Woolf, E., Hillel, J., Oefner, P.J., Feldman, M. (2003) Hum. Mutat., submitted.

  199. MitoP2, an integrated database on mitochondrial proteins in yeast and man.
    Andreoli, C., Prokisch, H., Hortnagel, K., Mueller, J. C., Munsterkotter, M. Scharfe, C., Meitinger, T. (2004). Nucleic Acids Res. 2004 Jan 1;32 Database issue:D459-62. [PubMed]

  200. Excavating Y-chromosome haplotype strata in Anatolia.
    Cinnioglu, C., King, R., Kivisild, T., Kalfoglu, E., Atasoy, S., Cavalleri, G. L., Lillie, A. S., Roseman, C. C., Lin, A. A., Prince, K., Oefner, P. J., Shen, P., Semino, O., Cavalli-Sforza, L. L., Underhill, P. A. (2004). Hum Genet. 2004 Jan;114(2):127-48. Epub 2003 Oct 29. [PubMed], [Publisher]

  201. Chemogenomic profiling: identifying the functional interactions of small molecules in yeast
    Giaever, G., Flaherty, P., Kumm, J., Proctor, M., Nislow, C., Jaramillo, D. F., Chu, A. M., Jordan, M. I., Arkin, A. P., Davis, R. W. (2004). Proc Natl Acad Sci U S A. 2004 Jan 20;101(3):793-8. Epub 2004 Jan 12 [PubMed], [Publisher Full Text]

  202. A genome-wide study of gene activity reveals developmental signaling pathways in the preimplantation mouse embryo.
    Wang QT, Piotrowska K, Ciemerych MA, Milenkovic L, Scott MP, Davis RW, Zernicka-Goetz M. (2004). Dev Cell. 2004 Jan;6(1):133-44. [PubMed], [Publisher Full Text]

  203. Two ATM variants and breast cancer risk.
    Antoniou, A.C., Jenkins, M., Thompson, D., Marsh, A., Chen, X., Wayne, T., Tesoriero, A., Waddell, N., Milne, R., Spurdle, A., Thorstenson, Y., Southey, M., Giles, G., kConFab Investigators, Khanna, K., Sambrook, J., Oefner, P., Goldgar, D., Hopper, J., Doug Easton, D., Chenevix-Trench, G. (2004). J. Natl. Cancer Inst., submitted.

  204. Comparison of HPLC, LC/MS, and CZE in the mapping of an LOH interval on 11p in ovarian cancer.
    Hauenstein, E., Arnold, N., Hoelzl, G., Jacobsen, A., Ramser, J., Meindl, A., Kiechle, M., Oefner, P., Gross, E. (2004). Hum. Mutat., submitted.

  205. Expression of foraging gene differs in ants and bees.
    Ingram, K., Gordon, D., Oefner, P. (2004). Science, submitted.

  206. Origin, diffusion and differentiation of Y-chromosome haplogroups E and J: inferences on the Neolithization of Europe and later migratory events in the Mediterranean area.
    Am J Hum Genet. 2004 May;74(5):1023-34. Epub 2004 Apr 06. [PubMed], [Publisher Full Text]

  207. Global Genetic Analysis.
    Elahi E., Kumm, J., Ronaghi, M. (2004). J Biochem Mol Biol. 2004 Jan 31;37(1):11-27. [PubMed]

  208. Pyrosequencing: a tool for DNA sequencing analysis.
    Elahi E., Ronaghi, M. (2004). Methods Mol Biol. 2004;255:211-20. [